Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles

Citation:

C. Narth, Lagardere, L., Polack, E., N Gresh, Q Wang,, Wang, Q., Bell, D. R., Rackers, J. A., Ponder, J. W., Ren, P. Y., and Piquemal, J. P., “Scalable improvement of SPME multipolar electrostatics in anisotropic polarizable molecular mechanics using a general short-range penetration correction up to quadrupoles,” J Comput ChemJ Comput Chem, vol. 37, pp. 494-506, 2016.

Abstract:

We propose a general coupling of the Smooth Particle Mesh Ewald SPME approach for distributed multipoles to a short-range charge penetration correction modifying the charge-charge, charge-dipole and charge-quadrupole energies. Such an approach significantly improves electrostatics when compared to ab initio values and has been calibrated on Symmetry-Adapted Perturbation Theory reference data. Various neutral molecular dimers have been tested and results on the complexes of mono- and divalent cations with a water ligand are also provided. Transferability of the correction is adressed in the context of the implementation of the AMOEBA and SIBFA polarizable force fields in the TINKER-HP software. As the choices of the multipolar distribution are discussed, conclusions are drawn for the future penetration-corrected polarizable force fields highlighting the mandatory need of non-spurious procedures for the obtention of well balanced and physically meaningful distributed moments. Finally, scalability and parallelism of the short-range corrected SPME approach are addressed, demonstrating that the damping function is computationally affordable and accurate for molecular dynamics simulations of complex bio- or bioinorganic systems in periodic boundary conditions.

Notes:

Narth, ChristopheLagardere, LouisPolack, EtienneGresh, NohadWang, QiantaoBell, David RRackers, Joshua APonder, Jay WRen, Pengyu YPiquemal, Jean-PhilipengR01 GM106137/GM/NIGMS NIH HHS/R01 GM114237/GM/NIGMS NIH HHS/GM 114237/GM/NIGMS NIH HHS/GM106137/GM/NIGMS NIH HHS/Research Support, N.I.H., ExtramuralResearch Support, Non-U.S. Gov'tResearch Support, U.S. Gov't, Non-P.H.S.2016/01/28 06:00J Comput Chem. 2016 Feb 15;37(5):494-506. doi: 10.1002/jcc.24257.