Publications by Year: 2010

2010
J. Zhang, King, C. A., Dalby, K., and Ren, P., “Conformational preference of ChaK1 binding peptides: a molecular dynamics study,” PMC biophysics, vol. 3, pp. 2, 2010.
J. M. Fonner, Schmidt, C. E., and Ren, P., “A combined molecular dynamics and experimental study of doped polypyrrole,” Polymer, vol. 51, pp. 4985–4993, 2010.
J. C. Wu, Piquemal, J. - P., Chaudret, R., Reinhardt, P., and Ren, P., “Polarizable molecular dynamics simulation of Zn (II) in water using the AMOEBA force field,” Journal of chemical theory and computation, vol. 6, pp. 2059–2070, 2010.
K. Callaway, Waas, W. F., Rainey, M. A., Ren, P., and Dalby, K. N., “Phosphorylation of the transcription factor Ets-1 by ERK2: rapid dissociation of ADP and phospho-Ets-1,” Biochemistry, vol. 49, pp. 3619–3630, 2010.
Z. Xia, Gardner, D. P., Gutell, R. R., and Ren, P., “Coarse-grained model for simulation of RNA three-dimensional structures,” The Journal of Physical Chemistry B, vol. 114, pp. 13497–13506, 2010.
C. Yan, Pattani, V., Tunnell, J. W., and Ren, P., “Temperature-induced unfolding of epidermal growth factor (EGF): insight from molecular dynamics simulation,” Journal of Molecular Graphics and Modelling, vol. 29, pp. 2–12, 2010.
J. W. Ponder, Wu, C., Ren, P., Pande, V. S., Chodera, J. D., Schnieders, M. J., Haque, I., Mobley, D. L., Lambrecht, D. S., DiStasio Jr, R. A., and others,Current status of the AMOEBA polarizable force field,” The journal of physical chemistry B, vol. 114, pp. 2549–2564, 2010.
J. M. Fonner, Schmidt, C. E., and Ren, P., “A combined molecular dynamics and experimental study of doped polypyrrole,” Polymer, vol. 51, pp. 4985-4993, 2010.
M. M. Nguyen, Abdelmelek, M., Zhang, J., Ren, P., and Suggs, L. J., “DEVELOPING DEPSIPEPTIDES AS BIOMIMETIC STRUCTURES THROUGH SECONDARY STRUCTURE,” Polymer Preprints, vol. 51, pp. 440, 2010.