Publications

Submitted
N. Hao, Behar, M., Elston, T. C., and Dohlman, H. G., “(2007),” Systems biology analysis of {G} protein and {MAP} kinase signaling in yeast, {Oncogene}, vol. 26, pp. 3254–3266, Submitted.
M. Behar, Dohlman, H. G., and Elston, T. C., “(2007),” Kinetic insulation as an effective mechanism for achieving pathway specificity in intracellular signaling networks, {PNAS}, vol. 104, pp. 16146–16151, Submitted.
N. Hao, Nayak, S., Behar, M., Shanks, R., Nagiec, M., Errede, B., Hasty, J., Elston, T. C., and Dohlman, H. G., “(2007),” Regulation of cell signaling dynamics by the protein kinase-scaffold {Ste}5, {Mol} {Cell}, vol. 30, pp. 649–56, Submitted.
N. Hao, Behar, M., Parnell, S. C., Torres, M. P., Borchers, C. H., Elston, T. C., and Dohlman, H. G., “(2007),” A Systems-Biology Analysis of Feedback Inhibition in the Sho1 Osmotic-Stress-Response Pathway, Curr Biol, vol. 17, pp. 659–667, Submitted.
M. Behar, Hao, N., Dohlman, H. G., and Elston, T. C., “(2007),” Mathematical and {Computational} {Analysis} of {Adaptation} via {Feedback} {Inhibition} in {Signal} {Transduction} {Pathways}, {Biophys} {J}, vol. 93, pp. 806–821, Submitted.
S. Wang, Xie, W., Rylander, M. N., Tucker, P. W., Aggarwal, S., and Diller, K. R., 2007, "HSP70 Kinetics Study by Continuous Observation of HSP-GFP Fusion Protein Expression on a Perfusion Heating Stage, " Biotechnology and Bioengineering. 99, Submitted, pp. 146–154.
M. N. Rylander, Feng, Y., Bass, J., and Diller, K. R., 2007, "HSP Expression and Damage Optimization Algorithm for Prostate Cancer Therapy Design, " Lasers in Surgery and Medicine. 39, Submitted, pp. 731–746.
M. Behar, Hao, N., Shanks, R., Dohlman, H. G., and Elston, T. C., (2008). Dose-to-duration encoding and signaling beyond saturation in intracellular signaling networks, {PLoS} {Comput}. {Biol}. 4:e1000197, Submitted.
Y. Feng, Oden, J. T., and Rylander, M. N., “2008, " A Two-State Cell Damage Model Under Hyperthermic Conditions: Theory and In Vitro Experiments, " Journal of Biomechanical Engineering,” 130, pp. 0410161–10., Submitted.
Y. Feng, Fuentes*, D., Hawkins*, A., Bass, J., Rylander, M. N., Elliott, A., Shetty, A., Stafford, R. J., and Oden, J. T., 2009, "Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment, " Special issue on Computational Biomedical Engineering for Journal of Engineering with Computers. 25, Submitted, pp. 3–13.
B. M. and Hoffmann, A., “(2010),” Understanding the Temporal Codes of Intra-Cellular Signals, Curr Opin Genet Dev, vol. 20, pp. 684–93, Submitted.
A. Peairs, Dai, R., Gan, L., Shimp, S., Rylander, M. N., Li, L., and Reilly, C. M., “2010, "Epigallocatechin-3-gallate (EGCG) attenuates inflammation in MRL/lpr mouse mesangial cells, " Cellular Molecular Immunolology,” vol. 7, pp. 123–32, Submitted.
J. W. Fisher, Buchanan, C. F., Szot, C., Sarkar, S., Rylander, C., and Rylander, M. N., “2010, "Photothermal Response of RENCA and PC3 Cells to Multi-walled Carbon Nanotubes and 1064 nm Laser Irradiation, " Cancer Research,” 70, vol. 23, pp. 1–10, Submitted.
S. Sarkar, Rylander, C. G., and Rylander, M. N., “2010, "Photothermal Response of Tissue Phantoms Containing Multi-walled Carbon Nanotubes: Modified Optical and thermal properties, " Journal of Biomechanical Engineering,” Submitted.
J. M., Errede, B., Behar, M., Mather, W., Nayak, S., Hasty, J., Dohlman, H. G., and Elston, T., “(2011),” Saccharomyces cerevisiae dynamically modifies pheromone gradients to achieve better mating efficiency, {Sci} {Signal}, Submitted.
S. �felbauer B., Polley, S., Behar, M., Ghosh, G., and Hoffmann, A., (2011). NEMO ensures signaling specificity of the pleiotropic {IKKb} by directing its kinase activity towards {IkBa}, {Mol} {Cell} 13;47(1):111-21, Submitted.
C. S. Szot, Buchanan, C. F., Freeman, J. W., and Rylander, M. N., 2011, "Collagen 1 Hydrogels as a Platform for In Vitro Solid Tumor Development, " Biomaterials. Submitted.
M. N. Rylander, Stafford, R. J., Hazle, J., Whitney, J., and Diller, K. R., 2011 "Heat Shock Protein Expression and Temperature Distribution in Prostate Tumors Treated with Laser Irradiation and Nanoshells. Submitted.
B. S., Behar, M., and Hoffmann, A., “(2012),” Lessons from modeling the {NFkB} pathway, {Immunol} {Rev}, vol. 246, pp. 221–38, Submitted.
M. SP, M, B., HA, B., A, H., PE, W., and others,(2013),” Analysis of the {RelA}:CBP/p300 Interaction Reveals {NF}-κB-Driven Transcription, {PLoS} Biol, Submitted.

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